Table of Software on ARC Systems

SOFTWARE	DESCRIPTION	CLUSTER
guppyGPU	SOFTWAREDESCRIPTION	INFER 4.5.2
julia	Julia for numerical computing	INFER 1.6.1-fosscuda-2020b 1.6.1-foss-2020b TINKERCLIFFS 1.6.2-foss-2020b 1.6.1-gomkl-2020b 1.6.1-foss-2020b
matlab	MATLAB is a programming and numeric computing platform	INFER R2021a R2022b TINKERCLIFFS R2022b R2021a
AlphaFoldData	ALPHAFOLDDATADESCRIPTION	INFER 2022.02
guppy	GUPPYDESCRIPTION	INFER 6.0.1
StarCCM+	STARCCM+DESCRIPTION	INFER 15.04.010 TINKERCLIFFS 17.02.008
tinker9	Molecular Design Software	INFER 1.4.0-nvhpc-21.11
HDF5	HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.	TINKERCLIFFS 1.10.6-gompi-2020a 1.10.7-iimpi-2021a 1.10.2-intel-2019b 1.10.5-gompi-2019b 1.10.6-intel-2019b 1.12.0-gompi-2020a 1.10.7-gompi-2021a 1.12.1-gompi-2021b 1.10.7-gompi-2020b 1.10.8-iimpi-2021a 1.12.2-gompi-2022a 1.10.7-iompi-2021a 1.10.2-iomkl-2019b 1.10.5-iimpi-2019b
Automake	Automake: GNU Standards-compliant Makefile generator	TINKERCLIFFS 1.16.4-GCCcore-11.2.0 1.16.2-GCCcore-10.2.0 1.16.5-GCCcore-11.3.0 1.16.1-GCCcore-8.2.0 1.16.1-GCCcore-9.3.0 1.15.1-GCCcore-8.3.0 1.16.1-GCCcore-8.3.0 1.16.3-GCCcore-10.3.0 1.16.5-GCCcore-12.2.0
gc	The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.	TINKERCLIFFS 7.6.12-GCCcore-9.3.0
libsndfile	Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.	TINKERCLIFFS 1.0.31-GCCcore-10.3.0 1.0.28-GCCcore-8.3.0 1.0.28-GCCcore-9.3.0 1.0.28-GCCcore-10.2.0
giflib	giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.	TINKERCLIFFS 5.2.1-GCCcore-10.2.0
PyCharm	PyCharm Community Edition: Python IDE for Professional Developers	TINKERCLIFFS 2021.1.1 2019.3.1
WRF	The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.	TINKERCLIFFS 4.2.2-foss-2020b-dmpar 4.2.2-foss-2020b-dm+sm 4.1.3-intel-2019b-dmpar
lftp	LFTP is a sophisticated ftp/http client, and a file transfer program supporting a number of network protocols. Like BASH, it has job control and uses the readline library for input. It has bookmarks, a built-in mirror command, and can transfer several files in parallel. It was designed with reliability in mind.	TINKERCLIFFS 4.9.2-GCCcore-11.2.0
Bison	Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.	TINKERCLIFFS 3.8.2 3.0.4 3.0.5 3.7.91 3.7.6-GCCcore-11.2.0 3.3.2-GCCcore-8.3.0 3.7.1 3.5.3 3.7.6-GCCcore-10.3.0 3.5.3-intel-2019b 3.3.2 3.8.2-GCCcore-12.2.0 3.7.6 3.0.5-GCCcore-8.2.0 3.5.3-GCCcore-9.3.0 3.8.2-GCCcore-11.3.0 3.7.1-GCCcore-10.2.0
NAMD	NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.	TINKERCLIFFS 2.13-foss-2020a-mpi
IJulia	Julia kernel for Jupyter	TINKERCLIFFS 1.24.0-Julia-1.8.5
libyaml	LibYAML is a YAML parser and emitter written in C.	TINKERCLIFFS 0.2.2-GCCcore-8.3.0 0.2.2-GCCcore-9.3.0 0.2.5-GCCcore-10.2.0
Go	Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.	TINKERCLIFFS 1.14 1.18.3
FFC	The FEniCS Form Compiler (FFC) is a compiler for finite element variational forms.	TINKERCLIFFS 2019.1.0.post0-foss-2019b-Python-3.7.4
ls-dyna	LS-Dyna software	TINKERCLIFFS R12.0.0 10.2.0-intel-2019b 13.0.0-intel-2019b 12.0.0-intel-2019b
zlib	zlib is designed to be a free, general-purpose, legally unencumbered – that is, not covered by any patents – lossless data-compression library for use on virtually any computer hardware and operating system.	TINKERCLIFFS 1.2.11 1.2.12 1.2.11-GCCcore-8.3.0 1.2.11-GCCcore-10.3.0 1.2.12-GCCcore-11.3.0 1.2.11-GCCcore-11.2.0 1.2.11-GCCcore-10.2.0 1.2.12-GCCcore-12.2.0 1.2.11-GCCcore-8.2.0 1.2.11-GCCcore-9.3.0
gmpy2	GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x	TINKERCLIFFS 2.1.0b4-GCC-8.3.0
zstd	Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.	TINKERCLIFFS 1.4.9-GCCcore-10.3.0 1.4.5-GCCcore-10.2.0 1.5.0-GCCcore-11.2.0 1.4.4-GCCcore-9.3.0 1.5.2-GCCcore-11.3.0
R-bundle-Bioconductor	Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.	TINKERCLIFFS 3.12-foss-2020b-R-4.0.3
VirtualGL	VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration.	TINKERCLIFFS 2.6.2-GCCcore-9.3.0
HMMER	HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.	TINKERCLIFFS 3.3.2-gompi-2020b 3.3.2-gompi-2022a
libxslt	Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).	TINKERCLIFFS 1.1.34-GCCcore-11.3.0
ncview	Ncview is a visual browser for netCDF format files. Typically you would use ncview to get a quick and easy, push-button look at your netCDF files. You can view simple movies of the data, view along various dimensions, take a look at the actual data values, change color maps, invert the data, etc.	TINKERCLIFFS 2.1.8-iimpi-2021a
hwloc	The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, …) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.	TINKERCLIFFS 2.2.0-GCCcore-9.3.0 2.7.1-GCCcore-11.3.0 2.4.1-GCCcore-10.3.0 1.11.12-GCCcore-8.3.0 2.2.0-GCCcore-10.2.0 1.11.11-GCCcore-8.2.0 2.5.0-GCCcore-11.2.0 2.2.0-GCCcore-8.3.0 2.8.0-GCCcore-12.2.0
libunistring	This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.	TINKERCLIFFS 0.9.10-GCCcore-9.3.0
Subread	High performance read alignment, quantification and mutation discovery	TINKERCLIFFS 2.0.3-GCC-11.2.0 2.0.3-GCC-10.3.0
gomkl	GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL	TINKERCLIFFS 2020a 2021a 2019a 2020b
Z3	Z3 is a theorem prover from Microsoft Research.	TINKERCLIFFS 4.8.10-GCCcore-10.2.0
libsodium	Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.	TINKERCLIFFS 1.0.18-GCCcore-11.3.0
matplotlib	matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.	TINKERCLIFFS 3.4.2-foss-2021a 3.3.3-foss-2020b 3.1.1-foss-2019b-Python-3.7.4 3.2.1-foss-2020a-Python-3.8.2 3.4.3-foss-2021b
Szip	Szip compression software, providing lossless compression of scientific data	TINKERCLIFFS 2.1.1-GCCcore-10.3.0 2.1.1-GCCcore-11.2.0 2.1.1-GCCcore-10.2.0 2.1.1-GCCcore-8.3.0 2.1.1-GCCcore-9.3.0 2.1.1-GCCcore-11.3.0
FLAC	FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.	TINKERCLIFFS 1.3.3-GCCcore-10.2.0 1.3.3-GCCcore-10.3.0
c-ares	c-ares is a C library for asynchronous DNS requests (including name resolves)	TINKERCLIFFS 1.17.2-GCCcore-10.3.0 1.18.1-GCCcore-11.3.0
RepeatScout	De Novo Repeat Finder, Price A.L., Jones N.C. and Pevzner P.A. Developed and tested with our multiple sequence version of RepeatScout ( 1.0.6 )	TINKERCLIFFS 1.0.6-GCC-11.3.0
CMake	CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.	TINKERCLIFFS 3.18.4-GCCcore-10.2.0 3.16.4-intel-2019b 3.22.1-GCCcore-11.2.0 3.16.4-GCCcore-9.3.0 3.15.3-GCCcore-8.3.0 3.23.1-GCCcore-11.3.0 3.13.3-GCCcore-8.2.0 3.21.1-GCCcore-11.2.0 3.24.3-GCCcore-12.2.0 3.12.1 3.20.1-GCCcore-10.3.0
COMSOL	COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems.	TINKERCLIFFS 5.4.0.388
RMBlast	RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program ‘rmblastn’ for use with RepeatMasker and RepeatModeler.	TINKERCLIFFS 2.13.0-gompi-2022a
Biopython	Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.	TINKERCLIFFS 1.78-foss-2020b 1.75-intel-2019b-Python-3.7.4 1.78-foss-2020a-Python-3.8.2 1.79-foss-2021a
Gdk-Pixbuf	The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.	TINKERCLIFFS 2.40.0-GCCcore-9.3.0 2.40.0-GCCcore-10.2.0 2.42.6-GCCcore-10.3.0
LZO	Portable lossless data compression library	TINKERCLIFFS 2.10-GCCcore-11.3.0
nlopt	NLopt is a free/open-source library for nonlinear optimization	TINKERCLIFFS 2.7.1
GLM	OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications.	TINKERCLIFFS 0.9.9.8-GCCcore-8.3.0
nanoget	Functions to extract information from Oxford Nanopore sequencing data and alignments	TINKERCLIFFS 1.18.1-foss-2021a
SWIG	SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.	TINKERCLIFFS 4.0.1-GCCcore-9.3.0 4.0.1-GCCcore-8.3.0 3.0.12-GCCcore-8.3.0 4.0.2-GCCcore-11.2.0
IPython	IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.	TINKERCLIFFS 8.5.0-GCCcore-11.3.0
FriBidi	The Free Implementation of the Unicode Bidirectional Algorithm.	TINKERCLIFFS 1.0.10-GCCcore-10.2.0 1.0.10-GCCcore-11.2.0 1.0.5-GCCcore-8.3.0 1.0.10-GCCcore-10.3.0 1.0.9-GCCcore-9.3.0
typing-extensions	Typing Extensions – Backported and Experimental Type Hints for Python	TINKERCLIFFS 3.7.4.3-GCCcore-10.2.0
nodejs	Node.js is a platform built on Chrome’s JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.	TINKERCLIFFS 12.19.0-GCCcore-10.2.0 14.17.0-GCCcore-10.3.0 12.16.1-GCCcore-9.3.0
FFTW.MPI	FFTW is a C subroutine library for computing the discrete Fourier transform (DFT	TINKERCLIFFS 3.3.10-gompi-2022a 3.3.10-gompi-2022b
SpaceRanger	Space Ranger is a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image.	TINKERCLIFFS 1.2.2-GCC-9.3.0
libgeotiff	Library for reading and writing coordinate system information from/to GeoTIFF files	TINKERCLIFFS 1.6.0-GCCcore-10.3.0 1.5.1-GCCcore-9.3.0 1.5.1-GCCcore-8.3.0
OpenMolcas	OpenMolcas is a quantum chemistry software package	TINKERCLIFFS 19.11-intel-2019b-Python-3.7.4 18.09-intel-2019b-Python-3.7.4
PMIx	Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b	TINKERCLIFFS 3.1.5-GCCcore-8.3.0 4.1.0-GCCcore-11.2.0 3.1.5-GCCcore-10.2.0 4.2.2-GCCcore-12.2.0 3.2.3-GCCcore-10.3.0 4.1.2-GCCcore-11.3.0
ncbi-vdb	The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.	TINKERCLIFFS 2.10.7-gompi-2020a
sympy	SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.	TINKERCLIFFS 1.5.1-foss-2019b-Python-3.7.4
CppUnit	CppUnit is the C++ port of the famous JUnit framework for unit testing.	TINKERCLIFFS 1.15.1-GCCcore-11.3.0 1.15.1-GCCcore-10.3.0
RE2	RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.	TINKERCLIFFS 2022-02-01-GCCcore-11.2.0 2022-02-01-GCCcore-10.3.0
p7zip	p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.	TINKERCLIFFS 17.04-GCCcore-11.3.0
LittleCMS	Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.	TINKERCLIFFS 2.12-GCCcore-10.3.0 2.11-GCCcore-10.2.0 2.9-GCCcore-9.3.0 2.9-GCCcore-8.3.0
MariaDB-connector-c	MariaDB Connector/C is used to connect applications developed in C/C++ to MariaDB and MySQL databases.	TINKERCLIFFS 3.1.7-intel-2019b 3.1.7-GCCcore-9.3.0
Anaconda3	Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture.	TINKERCLIFFS 2020.07 2020.11
pauvre	Tools for plotting Oxford Nanopore and other long-read data	TINKERCLIFFS 0.2.3-foss-2021a
patchelf	PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.	TINKERCLIFFS 0.10-GCCcore-8.3.0
dxa	DXA Dislocation Analysis	TINKERCLIFFS 1.3.6-foss-2020b
ABySS	Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler	TINKERCLIFFS 2.1.5-gompi-2020a
lxml	The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.	TINKERCLIFFS 4.9.1-GCCcore-11.3.0
FFmpeg	A complete, cross-platform solution to record, convert and stream audio and video.	TINKERCLIFFS 4.3.2-GCCcore-11.2.0 4.2.1-GCCcore-8.3.0 4.3.2-GCCcore-10.3.0 4.2.2-GCCcore-9.3.0 4.3.1-GCCcore-10.2.0
NVHPC	C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)	TINKERCLIFFS 21.2 20.7
OpenSSL	The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.	TINKERCLIFFS 1.1.1e-GCCcore-9.3.0 1.1 1.1.1e-intel-2019b
BCFtools	Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants	TINKERCLIFFS 1.11-GCC-10.2.0 1.10.2-GCC-9.3.0
Spark	Spark is Hadoop MapReduce done in memory	TINKERCLIFFS 3.2.1-foss-2021b
utf8proc	utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.	TINKERCLIFFS 2.5.0-GCCcore-10.2.0 2.6.1-GCCcore-11.2.0 2.6.1-GCCcore-10.3.0
PyYAML	PyYAML is a YAML parser and emitter for the Python programming language.	TINKERCLIFFS 5.3.1-GCCcore-10.2.0 5.1.2-GCCcore-8.3.0 5.3-GCCcore-9.3.0
protobuf	Google Protocol Buffers	TINKERCLIFFS 3.10.0-GCCcore-9.3.0 3.10.0-GCCcore-8.3.0 3.14.0-GCCcore-10.2.0
tcsh	Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.	TINKERCLIFFS 6.22.03-GCCcore-10.2.0 6.22.02-GCCcore-8.3.0
gperf	GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.	TINKERCLIFFS 3.1-GCCcore-11.2.0 3.1-GCCcore-10.2.0 3.1-GCCcore-10.3.0 3.1-GCCcore-8.3.0 3.1-GCCcore-8.2.0 3.1-GCCcore-9.3.0
METIS	METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.	TINKERCLIFFS 5.1.0-GCCcore-8.3.0 5.1.0-GCCcore-10.2.0 5.1.0-GCCcore-10.3.0 5.1.0-GCCcore-9.3.0
petsc4py	petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.	TINKERCLIFFS 3.12.0-foss-2019b-Python-3.7.4
MetaEuk	MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs.	TINKERCLIFFS 4-GCC-10.2.0
dealii-9.2.0	SOFTWAREDESCRIPTION	TINKERCLIFFS intel-2019b
X11	The X Window System (X11) is a windowing system for bitmap displays	TINKERCLIFFS 20210802-GCCcore-11.2.0 20190311-GCCcore-8.2.0 20190717-GCCcore-8.3.0 20201008-GCCcore-10.2.0 20200222-GCCcore-9.3.0 20210518-GCCcore-10.3.0 20200222-intel-2019b
pigz	pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.	TINKERCLIFFS 2.6-GCCcore-10.3.0
Autotools	This bundle collect the standard GNU build tools: Autoconf, Automake and libtool	TINKERCLIFFS 20220317-GCCcore-11.3.0 20220317-GCCcore-12.2.0 20180311-GCCcore-8.3.0 20200321-GCCcore-10.2.0 20180311-GCCcore-9.3.0 20180311-GCCcore-8.2.0 20210726-GCCcore-11.2.0 20210128-GCCcore-10.3.0
ParMETIS	ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.	TINKERCLIFFS 4.0.3-gompi-2019b
scikit-build	Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.	TINKERCLIFFS 0.10.0-foss-2020a-Python-3.8.2
parmetis-4.0.3	SOFTWAREDESCRIPTION	TINKERCLIFFS gcc-8.3.0 gcc-9.3.0 intel-2019b
QuantumESPRESSO	Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).	TINKERCLIFFS 6.5-intel-2019b
CP2K	CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.	TINKERCLIFFS 6.1-foss-2020a
Eigen	Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.	TINKERCLIFFS 3.3.8-GCCcore-10.2.0 3.3.7-GCCcore-9.3.0 3.4.0-GCCcore-11.3.0 3.4.0-GCCcore-11.2.0 3.3.7 3.3.7-GCCcore-8.3.0 3.3.9-GCCcore-11.2.0 3.3.9-GCCcore-10.3.0
re2c	re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.	TINKERCLIFFS 1.2.1-GCCcore-8.3.0 2.1.1-GCCcore-10.3.0 1.3-GCCcore-9.3.0
NCO	The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5.	TINKERCLIFFS 5.0.3-intel-2021a
TensorFlow	An open-source software library for Machine Intelligence	TINKERCLIFFS 2.4.1-foss-2020b
MATIO	matio is an C library for reading and writing Matlab MAT files.	TINKERCLIFFS 1.5.17-GCCcore-8.3.0
Zip	Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE’s PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP’s own UnZip, our primary objectives have been portability and other-than-MSDOS functionality	TINKERCLIFFS 3.0-GCCcore-10.2.0
lz4	LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.	TINKERCLIFFS 1.9.3-GCCcore-11.3.0 1.9.3-GCCcore-10.3.0 1.9.2-GCCcore-9.3.0 1.9.3-GCCcore-11.2.0 1.9.2-GCCcore-10.2.0
AUGUSTUS	AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences	TINKERCLIFFS 3.4.0-foss-2020b
double-conversion	Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.	TINKERCLIFFS 3.1.5-GCCcore-10.2.0 3.1.4-GCCcore-8.3.0 3.1.5-GCCcore-10.3.0 3.1.5-GCCcore-9.3.0
AtomPAW	AtomPAW is a Projector-Augmented Wave Dataset Generator that can be used both as a standalone program and a library.	TINKERCLIFFS 4.1.0.5-intel-2019b
PCRE	The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.	TINKERCLIFFS 8.44-GCCcore-10.2.0 8.44-GCCcore-10.3.0 8.45-GCCcore-11.2.0 8.45-GCCcore-11.3.0 8.43-GCCcore-8.3.0 8.44-GCCcore-9.3.0
EasyBuild	EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.	TINKERCLIFFS 4.4.0 4.4.2 4.2.2 4.3.4 4.7.1 4.3.2 4.3.3 4.6.1
tpl-4.4.18	SOFTWAREDESCRIPTION	TINKERCLIFFS GCC-9.3.0 intel-2019b
picard	A set of tools (in Java) for working with next generation sequencing data in the BAM format.	TINKERCLIFFS 2.21.6-Java-11
HTSeq	HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.	TINKERCLIFFS 0.11.3-foss-2021b
GLPK	The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.	TINKERCLIFFS 4.65-GCCcore-8.3.0 4.65-GCCcore-9.3.0 5.0-GCCcore-10.3.0 4.65-GCCcore-10.2.0
SEPP	SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.	TINKERCLIFFS 4.4.0-foss-2020b
glew	The OpenGL Extension Wrangler Library The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform. OpenGL core and extension functionality is exposed in a single header file. GLEW has been tested on a variety of operating systems, including Windows, Linux, Mac OS X, FreeBSD, Irix, and Solaris.	TINKERCLIFFS 2.1.0-GCCcore-8.2.0
ISA-L	Intelligent Storage Acceleration Library	TINKERCLIFFS 2.30.0-GCCcore-10.3.0 2.30.0-GCCcore-11.2.0
pixman	Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.	TINKERCLIFFS 0.40.0-GCCcore-10.2.0 0.38.4-GCCcore-8.3.0 0.38.4-GCCcore-9.3.0 0.40.0-GCCcore-10.3.0
Hypre	Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.	TINKERCLIFFS 2.18.2-foss-2019b 2.18.2-intel-2019b
Ghostscript	Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.	TINKERCLIFFS 9.53.3-GCCcore-10.2.0 9.52-intel-2019b 9.52-GCCcore-9.3.0 9.54.0-GCCcore-10.3.0
TINKER	The TINKER molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers.	TINKERCLIFFS 8.8.1-foss-2020a
Arrow	Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.	TINKERCLIFFS 6.0.0-foss-2021a 6.0.0-foss-2021b
Miniconda3	Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.	TINKERCLIFFS 4.7.10
Pillow	Pillow is the ‘friendly PIL fork’ by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.	TINKERCLIFFS 6.2.1-GCCcore-8.3.0 7.0.0-GCCcore-9.3.0-Python-3.8.2 8.3.2-GCCcore-11.2.0 8.2.0-GCCcore-10.3.0 8.0.1-GCCcore-10.2.0
APR	Apache Portable Runtime (APR) libraries.	TINKERCLIFFS 1.7.0-GCCcore-10.2.0
libfabric	Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.	TINKERCLIFFS 1.11.0-GCCcore-10.2.0 1.12.1-GCCcore-10.3.0 1.16.1-GCCcore-12.2.0 1.13.2-GCCcore-11.2.0 1.15.1-GCCcore-11.3.0 1.11.0-GCCcore-8.3.0
kaldi	Kaldi is a toolkit for speech recognition	TINKERCLIFFS 20210429-foss-2020b
plotly.py	An open-source, interactive graphing library for Python	TINKERCLIFFS 5.1.0-GCCcore-10.3.0
h5py	HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.	TINKERCLIFFS 3.7.0-foss-2022a 2.10.0-foss-2020a-Python-3.8.2
aria2	aria2 is a lightweight multi-protocol & multi-source command-line download utility.	TINKERCLIFFS 1.36.0-GCCcore-11.3.0
LMDB	LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.	TINKERCLIFFS 0.9.29-GCCcore-11.3.0 0.9.24-GCCcore-9.3.0 0.9.24-GCCcore-10.2.0
RECON	Patched version of RECON to be used with RepeatModeler.	TINKERCLIFFS 1.08-GCC-11.3.0
cairo	Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB	TINKERCLIFFS 1.16.0-GCCcore-9.3.0 1.16.0-GCCcore-8.3.0 1.16.0-GCCcore-10.3.0 1.16.0-GCCcore-10.2.0
gaussian	Gaussian(09.d01) is a computer program for computational quantum chemistry that includes various methods for electronic structure calculations.	TINKERCLIFFS 09.d01 09.e01
Perl	Larry Wall’s Practical Extraction and Report Language	TINKERCLIFFS 5.30.0-GCCcore-8.3.0 5.36.0-GCCcore-12.2.0 5.34.0-GCCcore-11.2.0 5.32.0-GCCcore-10.2.0 5.34.1-GCCcore-11.3.0 5.32.1-GCCcore-10.3.0 5.28.1-GCCcore-8.2.0 5.30.2-GCCcore-9.3.0
HDF	HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.	TINKERCLIFFS 4.2.14-GCCcore-8.3.0 4.2.15-GCCcore-10.3.0
PyTorch	Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.	TINKERCLIFFS 1.6.0-gomkl-2020a-Python-3.8.2 1.4.0-foss-2020a-Python-3.8.2 1.7.1-foss-2020b 1.6.0-foss-2020a-Python-3.8.2
NGS	NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.	TINKERCLIFFS 2.10.5-GCCcore-9.3.0
freeglut	freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.	TINKERCLIFFS 3.0.0-GCCcore-8.2.0
APR-util	Apache Portable Runtime (APR) util libraries.	TINKERCLIFFS 1.6.1-GCCcore-10.2.0
pocl	Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard	TINKERCLIFFS 1.6-GCC-10.2.0
yaml-cpp	yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec	TINKERCLIFFS 0.6.3-GCCcore-8.3.0
Cereal	cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.	TINKERCLIFFS 1.3.0
Trimmomatic	Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.	TINKERCLIFFS 0.39-Java-11
makeinfo	makeinfo is part of the Texinfo project, the official documentation format of the GNU project.	TINKERCLIFFS 6.7-GCCcore-10.3.0
GCCcore	The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,…).	TINKERCLIFFS 10.3.0 9.3.0 12.2.0 11.2.0 10.2.0 8.3.0 11.3.0 8.2.0
GCC	The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,…).	TINKERCLIFFS 8.2.0-2.31.1 10.3.0 9.3.0 12.2.0 11.2.0 10.2.0 8.3.0 11.3.0
Tkinter	Tkinter module, built with the Python buildsystem	TINKERCLIFFS 3.9.6-GCCcore-11.2.0 3.8.2-GCCcore-9.3.0 3.8.6-GCCcore-10.2.0 3.7.4-GCCcore-8.3.0 3.9.5-GCCcore-10.3.0
at-spi2-core	Assistive Technology Service Provider Interface.	TINKERCLIFFS 2.40.2-GCCcore-10.3.0 2.36.0-GCCcore-9.3.0 2.38.0-GCCcore-10.2.0
flatbuffers	FlatBuffers: Memory Efficient Serialization Library	TINKERCLIFFS 1.12.0-GCCcore-10.2.0
Judy	A C library that implements a dynamic array.	TINKERCLIFFS 1.0.5-GCCcore-11.3.0
imkl	Intel oneAPI Math Kernel Library	TINKERCLIFFS 2019.5.281-iimpi-2019b 2019.5.281-iompi-2019b 2019.1.144-gompi-2019a 2020.4.304-iimpi-2020b 2019.5.281-gompi-2020a 2021.2.0-iimpi-2021a 2020.4.304-gompi-2020b 2021.2.0-iompi-2021a 2022.2.1 2021.2.0-gompi-2021a
bolt_llm	The BOLT-LMM algorithm computes statistics for testing association between phenotype and genotypes using a linear mixed model (LMM)	TINKERCLIFFS 2.4.1-intel2021a
XML-LibXML	Perl binding for libxml2	TINKERCLIFFS 2.0205-GCCcore-9.3.0
TWL-NINJA	Nearly Infinite Neighbor Joining Application.	TINKERCLIFFS 0.98-cluster_only-GCC-11.3.0
FastQC	FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.	TINKERCLIFFS 0.11.9-Java-11
libarchive	Multi-format archive and compression library	TINKERCLIFFS 3.5.1-GCCcore-11.2.0 3.6.1-GCCcore-12.2.0 3.4.3-GCCcore-10.2.0 3.6.1-GCCcore-11.3.0 3.5.1-GCCcore-10.3.0
CD-HIT	CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.	TINKERCLIFFS 4.8.1-GCC-11.3.0
prodigal	Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm	TINKERCLIFFS 2.6.3-GCCcore-10.2.0
PROJ	Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates	TINKERCLIFFS 6.2.1-GCCcore-8.3.0 7.0.0-GCCcore-9.3.0 8.0.1-GCCcore-10.3.0
parallel	parallel: Build and execute shell commands in parallel	TINKERCLIFFS 20190922-GCCcore-8.3.0 20200522-GCCcore-9.3.0
GlobusConnectPersonal	Globus Connect Personal enables you to share and transfer files to and from your Linux laptop or desktop computer — even if it’s behind a firewall.	TINKERCLIFFS 3.2.0
DOLFIN	DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations.	TINKERCLIFFS 2019.1.0.post0-foss-2019b-Python-3.7.4
NASM	NASM: General-purpose x86 assembler	TINKERCLIFFS 2.14.02-GCCcore-8.3.0 2.15.05-GCCcore-10.3.0 2.15.05-GCCcore-11.3.0 2.15.05-GCCcore-10.2.0 2.15.05-GCCcore-11.2.0 2.14.02-GCCcore-9.3.0
ImageMagick	ImageMagick is a software suite to create, edit, compose, or convert bitmap images	TINKERCLIFFS 7.0.10-35-GCCcore-10.2.0 7.0.10-1-intel-2019b 7.0.10-1-GCCcore-9.3.0 7.0.11-14-GCCcore-10.3.0
bcl2fastq2	bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.	TINKERCLIFFS 2.20.0-GCC-9.3.0
MrBayes	MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.	TINKERCLIFFS 3.2.7-gompi-2020b
ATK	ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.	TINKERCLIFFS 2.36.0-GCCcore-10.3.0 2.36.0-GCCcore-9.3.0 2.36.0-GCCcore-10.2.0
ParaView	ParaView is a scientific parallel visualizer.	TINKERCLIFFS 5.8.0-foss-2020a-Python-3.8.2-mpi 5.9.1-foss-2021a-mpi
ISL	isl is a library for manipulating sets and relations of integer points bounded by linear constraints.	TINKERCLIFFS 0.23-GCCcore-10.3.0
BamTools	BamTools provides both a programmer’s API and an end-user’s toolkit for handling BAM files.	TINKERCLIFFS 2.5.1-GCC-10.2.0 2.5.1-GCC-9.3.0
sparsehash	An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.	TINKERCLIFFS 2.0.3-GCCcore-9.3.0
UDUNITS	UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.	TINKERCLIFFS 2.2.26-GCCcore-10.2.0 2.2.28-GCCcore-10.3.0 2.2.28-GCCcore-11.2.0 2.2.26-GCCcore-9.3.0 2.2.26-GCCcore-8.3.0
hmmer3	HMMER3DESCRIPTION	TINKERCLIFFS 3.3.2.1b2-hpc
Qt5	Qt is a comprehensive cross-platform C++ application framework.	TINKERCLIFFS 5.15.2-GCCcore-10.3.0 5.14.1-GCCcore-9.3.0 5.13.1-GCCcore-8.3.0
rclone	Rclone is a command line program to sync files and directories to and from a variety of online storage services	TINKERCLIFFS 1.60.0 1.42-amd64 1.42-foss-2020a-amd64
Libint	Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.	TINKERCLIFFS 2.6.0-GCC-10.2.0-lmax-6-cp2k 1.1.6-foss-2020a
libreadline	The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.	TINKERCLIFFS 8.0-GCCcore-9.3.0 8.1-GCCcore-10.3.0 8.1-GCCcore-11.2.0 8.1.2-GCCcore-11.3.0 8.0-GCCcore-10.2.0 8.0-GCCcore-8.3.0 8.0-GCCcore-8.2.0 8.2-GCCcore-12.2.0
pkgconfig	pkgconfig is a Python module to interface with the pkg-config command line tool	TINKERCLIFFS 1.5.5-GCCcore-11.3.0-python 1.5.1-GCCcore-10.2.0-python 1.5.1-GCCcore-9.3.0-Python-3.8.2 1.5.1-GCCcore-8.3.0-Python-3.7.4
Clang	C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library – use libstdc++ from GCC.	TINKERCLIFFS 11.0.1-GCCcore-10.2.0
WPS	WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.	TINKERCLIFFS 4.2-foss-2020b-dmpar
bokeh	Statistical and novel interactive HTML plots for Python	TINKERCLIFFS 2.0.2-foss-2020a-Python-3.8.2 2.2.3-foss-2020b-Python-3.8.6
libdap	A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes.	TINKERCLIFFS 3.20.8-GCCcore-11.2.0 3.20.8-intel-2021a
Mesa	Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.	TINKERCLIFFS 19.2.1-GCCcore-8.3.0 20.2.1-GCCcore-10.2.0 21.1.1-GCCcore-10.3.0 21.1.7-GCCcore-11.2.0 20.0.2-GCCcore-9.3.0 19.0.1-GCCcore-8.2.0 19.1.7-GCCcore-8.3.0
MPFR	The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.	TINKERCLIFFS 4.1.0-GCCcore-10.3.0 4.1.0-GCCcore-10.2.0 4.0.2-GCCcore-8.3.0 4.0.2-GCCcore-9.3.0
p4est-2.2	P4ESTDESCRIPTION	TINKERCLIFFS gcc-9.3.0 intel-2019b
guppyCPU	SOFTWAREDESCRIPTION	TINKERCLIFFS Anaconda3-2020.07
libxsmm	LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).	TINKERCLIFFS 1.10-GCC-9.3.0
p4est	p4est is a C library to manage a collection (a forest) of multiple connected adaptive quadtrees or octrees in parallel.	TINKERCLIFFS 2.2-intel-2019b gcc-8.3.0
VTK	The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.	TINKERCLIFFS 8.2.0-foss-2019b-Python-3.7.4 9.1.0-foss-2021b 8.2.0-foss-2020a-Python-3.8.2
GlobalArrays	Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model	TINKERCLIFFS 5.7.2-iomkl-2019b 5.7.2-intel-2019b
XZ	xz: XZ utilities	TINKERCLIFFS 5.2.5-GCCcore-11.2.0 5.2.5-GCCcore-10.2.0 5.2.5-GCCcore-11.3.0 5.2.5-GCCcore-8.3.0 5.2.7-GCCcore-12.2.0 5.2.5-intel-2019b 5.2.5-GCCcore-10.3.0 5.2.4-GCCcore-8.2.0 5.2.5-GCCcore-9.3.0 5.2.4-GCCcore-8.3.0
R	R is a free software environment for statistical computing and graphics.	TINKERCLIFFS 4.1.0-foss-2021a 4.0.3-foss-2020b 4.0.2-foss-2020a
BLAST+	Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.	TINKERCLIFFS 2.13.0-gompi-2022a 2.11.0-gompi-2020b 2.10.1-gompi-2020a
Nastran	NASTRANDESCRIPTION	TINKERCLIFFS 2021
M4	GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.	TINKERCLIFFS 1.4.18-GCCcore-10.3.0 1.4.19 1.4.18-GCCcore-10.2.0 1.4.19-GCCcore-11.2.0 1.4.19-GCCcore-12.2.0 1.4.18 1.4.18-GCCcore-8.3.0 1.4.18-GCCcore-9.3.0 1.4.17 1.4.18-GCCcore-8.2.0 1.4.19-GCCcore-11.3.0
Qhull	Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.	TINKERCLIFFS 2020.2-GCCcore-11.2.0 2020.2-GCCcore-10.3.0
FFTW	FFTW is a C subroutine library for computing the discrete Fourier transform (DFT	TINKERCLIFFS 3.3.8-intel-2019b 3.3.10-gompi-2021b 3.3.10-GCC-12.2.0 3.3.8-gompi-2019b 3.3.9-iompi-2021a 3.3.9-gompi-2021a 3.3.10-GCC-11.3.0 3.3.8-gompi-2020a 3.3.9-intel-2021a 3.3.8-gompi-2020b
libepoxy	Epoxy is a library for handling OpenGL function pointer management for you	TINKERCLIFFS 1.5.8-GCCcore-10.3.0 1.5.4-GCCcore-10.2.0 1.5.4-GCCcore-9.3.0
NLopt	NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.	TINKERCLIFFS 2.6.1-GCCcore-9.3.0 2.6.1-GCCcore-8.3.0 2.7.0-GCCcore-10.3.0 2.6.2-GCCcore-10.2.0
FlexiBLAS	FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.	TINKERCLIFFS 3.2.1-GCC-12.2.0 3.0.4-GCC-11.2.0 3.2.0-GCC-11.3.0 3.0.4-GCC-10.3.0
fastp	A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.	TINKERCLIFFS 0.23.2-GCC-11.2.0 0.23.2-GCC-10.3.0
DB	Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.	TINKERCLIFFS 18.1.40-GCCcore-10.3.0 18.1.40-GCCcore-11.2.0 18.1.40-GCCcore-10.2.0 18.1.40-GCCcore-12.2.0 18.1.32-GCCcore-8.2.0 18.1.40-GCCcore-11.3.0
Subversion	Subversion is an open source version control system.	TINKERCLIFFS 1.14.0-GCCcore-10.2.0
dask	Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.	TINKERCLIFFS 2.18.1-foss-2020a-Python-3.8.2 2021.2.0-foss-2020b-Python-3.8.6
foss	GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.	TINKERCLIFFS 2020b 2019b 2022b 2022a 2021b 2021a 2020a
GEOS	GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)	TINKERCLIFFS 3.8.0-iccifort-2019.5.281-Python-3.7.4 3.9.1-GCC-10.3.0 3.8.1-GCC-9.3.0-Python-3.8.2
UCX	Unified Communication X An open-source production grade communication framework for data centric and high-performance applications	TINKERCLIFFS 1.8.0-GCCcore-9.3.0 1.10.0-GCCcore-10.3.0 1.9.0-GCCcore-10.2.0 1.12.1-GCCcore-11.3.0 1.11.2-GCCcore-11.2.0 1.8.0-GCCcore-8.3.0 1.13.1-GCCcore-12.2.0
UCC	UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.	TINKERCLIFFS 1.0.0-GCCcore-11.3.0 1.1.0-GCCcore-12.2.0
ncdf4	ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files	TINKERCLIFFS 1.17-foss-2020b-R-4.0.3
VTune	Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.	TINKERCLIFFS 2022.2.0 2022.3.0
LLVM	The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation (“LLVM IR”). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler	TINKERCLIFFS 11.0.0-GCCcore-10.2.0 9.0.0-GCCcore-8.3.0 12.0.1-GCCcore-11.2.0 11.1.0-GCCcore-10.3.0 9.0.1-GCCcore-9.3.0 7.0.1-GCCcore-8.2.0
SUNDIALS	SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers	TINKERCLIFFS 5.1.0-foss-2019b
boost-1.58.0	BOOSTDESCRIPTION	TINKERCLIFFS intel-2019b
glog	A C++ implementation of the Google logging module.	TINKERCLIFFS 0.4.0-GCCcore-9.3.0
VASP	The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.	TINKERCLIFFS 5.4.4-intel-2019b
GTK3	GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.	TINKERCLIFFS 3.24.29-GCCcore-10.3.0
nettle	Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, …), in applications like LSH or GNUPG, or even in kernel space.	TINKERCLIFFS 3.4.1-GCCcore-8.2.0 3.7.2-GCCcore-10.3.0 3.6-GCCcore-10.2.0 3.5.1-GCCcore-8.3.0
libunwind	The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications	TINKERCLIFFS 1.5.0-GCCcore-11.2.0 1.4.0-GCCcore-10.2.0 1.4.0-GCCcore-10.3.0 1.3.1-GCCcore-9.3.0 1.3.1-GCCcore-8.2.0 1.3.1-GCCcore-8.3.0
GTK+	GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.	TINKERCLIFFS 3.24.17-GCCcore-9.3.0 3.24.23-GCCcore-10.2.0
SCOTCH	Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.	TINKERCLIFFS 6.0.9-gompi-2020a 6.1.0-gompi-2021a 6.0.9-iimpi-2019b 6.0.9-gompi-2019b
libgit2	libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.	TINKERCLIFFS 1.1.0-GCCcore-10.3.0
GStreamer	GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.	TINKERCLIFFS 1.18.4-GCC-10.3.0
libevent	The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.	TINKERCLIFFS 2.1.12-GCCcore-10.2.0 2.1.11-GCCcore-9.3.0 2.1.12-GCCcore-12.2.0 2.1.12-GCCcore-11.3.0 2.1.12-GCCcore-11.2.0 2.1.11-GCCcore-8.3.0 2.1.12-GCCcore-10.3.0
libtirpc	Libtirpc is a port of Suns Transport-Independent RPC library to Linux.	TINKERCLIFFS 1.3.2-GCCcore-10.3.0 1.2.6-GCCcore-8.3.0 1.3.2-GCCcore-11.2.0
networkx	NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.	TINKERCLIFFS 2.4-foss-2020a-Python-3.8.2
x264	x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.	TINKERCLIFFS 20191217-GCCcore-9.3.0 20190925-GCCcore-8.3.0 20210414-GCCcore-10.3.0 20210613-GCCcore-11.2.0 20201026-GCCcore-10.2.0
x265	x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.	TINKERCLIFFS 3.2-GCCcore-8.3.0 3.5-GCCcore-10.3.0 3.3-GCCcore-9.3.0 3.5-GCCcore-11.2.0 3.3-GCCcore-10.2.0
ZeroMQ	ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It’s fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.	TINKERCLIFFS 4.3.4-GCCcore-11.3.0
Qualimap	Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.	TINKERCLIFFS 2.2.1-foss-2020b-R-4.0.3
OpenBLAS	OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.	TINKERCLIFFS 0.3.18-GCC-11.2.0 0.3.12-GCC-10.2.0 0.3.20-GCC-11.3.0 0.3.21-GCC-12.2.0 0.3.15-GCC-10.3.0 0.3.7-GCC-8.3.0 0.3.9-GCC-9.3.0
PCRE2	The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.	TINKERCLIFFS 10.34-intel-2019b 10.40-GCCcore-11.3.0 10.36-GCCcore-10.3.0 10.35-GCCcore-10.2.0 10.33-GCCcore-8.3.0 10.34-GCCcore-9.3.0
Kaleido	Fast static image export for web-based visualization libraries with zero dependencies	TINKERCLIFFS 0.2.1-GCCcore-10.3.0
flatbuffers-python	Python Flatbuffers runtime library.	TINKERCLIFFS 1.12-GCCcore-10.2.0
fontconfig	Fontconfig is a library designed to provide system-wide font configuration, customization and application access.	TINKERCLIFFS 2.13.1-GCCcore-8.3.0 2.13.1-GCCcore-8.2.0 2.13.92-GCCcore-9.3.0 2.13.93-GCCcore-10.3.0 2.13.94-GCCcore-11.2.0 2.13.92-GCCcore-10.2.0 2.13.92-intel-2019b
Bazel	Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google’s software.	TINKERCLIFFS 3.7.2-GCCcore-10.2.0
libdeflate	Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.	TINKERCLIFFS 1.7-GCCcore-10.3.0 1.8-GCCcore-11.2.0
Bowtie2	Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.	TINKERCLIFFS 2.4.1-GCC-9.3.0
freetype	FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.	TINKERCLIFFS 2.10.4-GCCcore-10.3.0 2.11.0-GCCcore-11.2.0 2.10.1-GCCcore-8.3.0 2.10.1-GCCcore-9.3.0 2.10.3-GCCcore-10.2.0 2.12.1-GCCcore-11.3.0 2.9.1-GCCcore-8.2.0
aspect-2.2.0	AspectDESCRIPTION	TINKERCLIFFS intel-2019b
Valgrind	Valgrind: Debugging and profiling tools	TINKERCLIFFS 3.16.1-gompi-2020a 3.16.1-gompi-2020b 3.16.1-iimpi-2019b
iimpi	Intel C/C++ and Fortran compilers, alongside Intel MPI.	TINKERCLIFFS 2022b 2021a 2020b 2021b 2019b
Yasm	Yasm: Complete rewrite of the NASM assembler with BSD license	TINKERCLIFFS 1.3.0-GCCcore-10.3.0 1.3.0-GCCcore-9.3.0 1.3.0-GCCcore-8.3.0 1.3.0-GCCcore-11.2.0 1.3.0-GCCcore-10.2.0
archspec	A library for detecting, labeling, and reasoning about microarchitectures	TINKERCLIFFS 0.1.0-GCCcore-9.3.0-Python-3.8.2 0.1.3-GCCcore-11.2.0
tbb	Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.	TINKERCLIFFS 2020.1-GCCcore-9.3.0 2021.5.0-GCCcore-11.3.0 2020.3-GCCcore-11.2.0
Pysam	Pysam is a python module for reading and manipulating Samfiles. It’s a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.	TINKERCLIFFS 0.16.0.1-GCC-10.3.0 0.17.0-GCC-11.2.0 0.16.0.1-GCC-9.3.0
PnetCDF	Parallel netCDF: A Parallel I/O Library for NetCDF File Access	TINKERCLIFFS 1.12.1-gompi-2019b 1.12.2-iimpi-2021a 1.12.1-gompi-2020a
Trilinos	The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.	TINKERCLIFFS 12.12.1-foss-2019b-Python-3.7.4
dijitso	dijitso is a Python module for distributed just-in-time shared library building.	TINKERCLIFFS 2019.1.0-foss-2019b-Python-3.7.4
Brotli	Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.	TINKERCLIFFS 1.0.9-GCCcore-11.2.0 1.0.9-GCCcore-11.3.0
Dalton	The Dalton suite consists of two separate executables, Dalton and LSDalton. The Dalton code is a powerful tool for a wide range of molecular properties at different levels of theory, whereas LSDalton is a linear-scaling HF and DFT code suitable for large molecular systems, now also with some CCSD capabilites. Any published work arising from use of one of the Dalton programs must acknowledge that by a proper reference. The following list of capabilities of the Dalton programs should give you some indication of whether or not the Dalton suite is able to meet your requirements..	TINKERCLIFFS 2020-iomkl-2019b-nompi 2020-iomkl-2019b
libvorbis	Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format	TINKERCLIFFS 1.3.7-GCCcore-10.3.0 1.3.7-GCCcore-10.2.0
starccm+	STARCCM+DESCRIPTION	TINKERCLIFFS 17.06.007 15.04.010 12.04.011
pkgconf	pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.	TINKERCLIFFS 1.8.0-GCCcore-11.3.0 1.9.3-GCCcore-12.2.0
SciPy-bundle	Bundle of Python packages for scientific software	TINKERCLIFFS 2020.03-foss-2020a-Python-3.8.2 2020.03-gomkl-2020a-Python-3.8.2 2020.11-foss-2020b 2019.10-intel-2019b-Python-3.7.4 2021.10-foss-2021b 2022.05-foss-2022a 2021.05-foss-2021a 2019.10-foss-2019b-Python-3.7.4
tecplot	TECPLOTDESCRIPTION	TINKERCLIFFS 17.1.0
libpciaccess	Generic PCI access library.	TINKERCLIFFS 0.16-GCCcore-11.2.0 0.16-GCCcore-10.2.0 0.14-GCCcore-8.2.0 0.16-GCCcore-11.3.0 0.14-GCCcore-8.3.0 0.16-GCCcore-9.3.0 0.16-GCCcore-8.3.0 0.17-GCCcore-12.2.0 0.16-intel-2019b 0.16-GCCcore-10.3.0
FDS	Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires.	TINKERCLIFFS 6.7.6-intel-2020b 6.8.0-intel-2022b 6.7.4-intel-2019b 6.7.1-intel-2019b 6.7.5-intel-2019b
amd-uprof	AMD μProf for performance analysis	TINKERCLIFFS 3.4.475
JasPer	The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.	TINKERCLIFFS 2.0.24-GCCcore-10.2.0 2.0.28-GCCcore-10.3.0 2.0.14-GCCcore-8.3.0 2.0.14-GCCcore-9.3.0
jemalloc	jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.	TINKERCLIFFS 5.2.1-GCCcore-11.3.0 5.2.1-GCCcore-11.2.0 5.3.0-GCCcore-11.3.0
Boost	Boost provides free peer-reviewed portable C++ source libraries.	TINKERCLIFFS 1.77.0-GCC-11.2.0 1.76.0-intel-compilers-2021.2.0 1.74.0-GCC-10.2.0 1.72.0-gompi-2020a 1.76.0-GCC-10.3.0 1.71.0-gompi-2019b 1.79.0-GCC-11.3.0 1.71.0-iimpi-2019b
MAFFT	MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.	TINKERCLIFFS 7.505-GCC-11.3.0-with-extensions
FIAT	The FInite element Automatic Tabulator (FIAT) supports generation of arbitrary order instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.	TINKERCLIFFS 2019.1.0-foss-2019b-Python-3.7.4
Boost.MPI	Boost provides free peer-reviewed portable C++ source libraries.	TINKERCLIFFS 1.79.0-gompi-2022a
gompi	GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.	TINKERCLIFFS 2021b 2020b 2019b 2022b 2022a 2020a 2021a 2019a
ScaFaCoS	ScaFaCoS is a library of scalable fast coulomb solvers.	TINKERCLIFFS 1.0.1-foss-2021b 1.0.1-foss-2020a
DBus	D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a “single instance” application or daemon, and to launch applications and daemons on demand when their services are needed.	TINKERCLIFFS 1.13.18-GCCcore-10.2.0 1.13.18-GCCcore-10.3.0 1.13.12-GCCcore-8.3.0 1.13.12-GCCcore-9.3.0
LibTIFF	tiff: Library and tools for reading and writing TIFF data files	TINKERCLIFFS 4.1.0-GCCcore-10.2.0 4.1.0-GCCcore-9.3.0 4.3.0-GCCcore-11.2.0 4.2.0-GCCcore-10.3.0 4.0.10-GCCcore-8.3.0 4.1.0-GCCcore-8.3.0
netCDF-Fortran	NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.	TINKERCLIFFS 4.5.3-iompi-2021a 4.5.3-gompi-2020b 4.4.4-intel-2019b 4.5.2-iimpi-2019b 4.5.3-iimpi-2021a 4.5.2-gompi-2019b
molmod	MolMod is a Python library with many compoments that are useful to write molecular modeling programs.	TINKERCLIFFS 1.4.5-foss-2020a-Python-3.8.2
libpng	libpng is the official PNG reference library	TINKERCLIFFS 1.6.36-GCCcore-8.2.0 1.6.37-GCCcore-9.3.0 1.6.37-GCCcore-8.3.0 1.6.37-GCCcore-11.2.0 1.6.37-GCCcore-10.2.0 1.6.37-GCCcore-10.3.0 1.6.37-GCCcore-11.3.0
libgd	GD is an open source code library for the dynamic creation of images by programmers.	TINKERCLIFFS 2.3.1-GCCcore-10.3.0 2.2.5-GCCcore-8.3.0
TopHat	TopHat is a fast splice junction mapper for RNA-Seq reads.	TINKERCLIFFS 2.1.2-iimpi-2019b
nanomath	A few simple math function for other Oxford Nanopore processing scripts	TINKERCLIFFS 1.2.1-foss-2021a
Jellyfish	Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.	TINKERCLIFFS 2.3.0-GCC-9.3.0
OpenPGM	OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.	TINKERCLIFFS 5.2.122-GCCcore-11.3.0
cppy	A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.	TINKERCLIFFS 1.1.0-GCCcore-10.3.0 1.1.0-GCCcore-11.2.0
hypothesis	Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.	TINKERCLIFFS 6.14.6-GCCcore-11.2.0 5.41.2-GCCcore-10.2.0 6.13.1-GCCcore-10.3.0 6.46.7-GCCcore-11.3.0 5.6.0-GCCcore-9.3.0-Python-3.8.2 5.41.5-GCCcore-10.2.0 4.44.2-GCCcore-8.3.0-Python-3.7.4
Flye	Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies.	TINKERCLIFFS 2.9-GCC-10.3.0 2.9.1-GCC-11.2.0 2.9-intel-compilers-2021.2.0
PLUMED	PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.	TINKERCLIFFS 2.6.0-foss-2020a-Python-3.8.2 2.5.1-foss-2020a 2.7.3-foss-2021b
libiconv	Libiconv converts from one character encoding to another through Unicode conversion	TINKERCLIFFS 1.17-GCCcore-11.3.0 1.16-GCCcore-10.2.0 1.16-GCCcore-11.2.0 1.16-GCCcore-10.3.0
Tcl	Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.	TINKERCLIFFS 8.6.12-GCCcore-12.2.0 8.6.12-GCCcore-11.3.0 8.6.11-GCCcore-11.2.0 8.6.11-GCCcore-10.3.0 8.6.10-GCCcore-9.3.0 8.6.10-intel-2019b 8.6.10-GCCcore-10.2.0 8.6.9-GCCcore-8.2.0 8.6.9-GCCcore-8.3.0
QIIME2	QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.	TINKERCLIFFS 2020.6
binutils	binutils: GNU binary utilities	TINKERCLIFFS 2.35 2.34 2.37 2.38 2.30 2.32-GCCcore-8.3.0 2.32 2.37-GCCcore-11.2.0 2.39 2.38-GCCcore-11.3.0 2.31.1-GCCcore-8.2.0 2.34-GCCcore-9.3.0 2.35-GCCcore-10.2.0 2.36.1-GCCcore-10.3.0 2.36.1 2.39-GCCcore-12.2.0 2.31.1 2.34-intel-2019b
libGLU	The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.	TINKERCLIFFS 9.0.0-GCCcore-8.2.0 9.0.1-GCCcore-10.2.0 9.0.1-GCCcore-10.3.0 9.0.1-GCCcore-8.3.0 9.0.2-GCCcore-11.2.0 9.0.1-GCCcore-9.3.0
HISAT2	HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).	TINKERCLIFFS 2.2.1-foss-2020a
util-linux	Set of Linux utilities	TINKERCLIFFS 2.37-GCCcore-11.2.0 2.35-intel-2019b 2.35-GCCcore-9.3.0 2.38-GCCcore-11.3.0 2.36-GCCcore-10.3.0 2.36-GCCcore-10.2.0 2.34-GCCcore-8.3.0 2.33-GCCcore-8.2.0
lpsolve	Mixed Integer Linear Programming (MILP) solver	TINKERCLIFFS 5.5.2.11-GCC-10.2.0
OpenFOAM	OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.	TINKERCLIFFS 9-foss-2021a v2006-foss-2020a
protobuf-python	Python Protocol Buffers runtime library.	TINKERCLIFFS 3.10.0-foss-2020a-Python-3.8.2 3.14.0-GCCcore-10.2.0 3.10.0-gomkl-2020a-Python-3.8.2 3.10.0-intel-2019b-Python-3.7.4
Salmon	Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.	TINKERCLIFFS 1.9.0-GCC-11.3.0 1.4.0-GCC-11.2.0
BeautifulSoup	Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.	TINKERCLIFFS 4.10.0-GCCcore-11.3.0
HTSlib	A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix	TINKERCLIFFS 1.11-GCC-10.2.0 1.10.2-GCC-9.3.0
Rust	Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.	TINKERCLIFFS 1.52.1-GCCcore-10.3.0 1.54.0-GCCcore-11.2.0 1.60.0-GCCcore-11.3.0
Wannier90	A tool for obtaining maximally-localised Wannier functions	TINKERCLIFFS 2.0.1.1-intel-2019b-abinit
Guile	Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.	TINKERCLIFFS 1.8.8-GCCcore-9.3.0
ncurses	The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.	TINKERCLIFFS 6.3-GCCcore-12.2.0 6.3-GCCcore-11.3.0 6.1-GCCcore-8.2.0 6.1-GCCcore-8.3.0 6.2-GCCcore-9.3.0 6.2-intel-2019b 6.3 6.2 6.1 6.0 6.2-GCCcore-11.2.0 6.2-GCCcore-10.2.0 6.2-GCCcore-10.3.0
MUMPS	A parallel sparse direct solver	TINKERCLIFFS 5.2.1-intel-2019b-metis 5.2.1-foss-2020a-metis 5.2.1-foss-2019b-metis 5.4.0-foss-2021a-metis
xxd	xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.	TINKERCLIFFS 8.2.4220-GCCcore-11.2.0
BEDTools	BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.	TINKERCLIFFS 2.29.2-GCC-9.3.0
ScaLAPACK	The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.	TINKERCLIFFS 2.1.0-gompi-2020a 2.1.0-gompi-2020b 2.1.0-gompi-2021a-fb 2.1.0-gompi-2021b-fb 2.2.0-gompi-2022b-fb 2.0.2-gompi-2019b 2.2.0-gompi-2022a-fb
AccelerateCFD_CE	Community Edition of AccelerateCFD platform for creating reduced order models from high fidelity CFD	TINKERCLIFFS 20210615-foss-2020a
UFL	The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions for weak forms in a notation close to mathematical notation.	TINKERCLIFFS 2019.1.0-foss-2019b-Python-3.7.4
libaio	Asynchronous input/output library that uses the kernels native interface.	TINKERCLIFFS 0.3.112-GCCcore-11.3.0
PLY	PLY is yet another implementation of lex and yacc for Python.	TINKERCLIFFS 3.11-GCCcore-8.3.0-Python-3.7.4
ANTLR	ANTLR, ANother Tool for Language Recognition, (formerly PCCTS	TINKERCLIFFS 2.7.7-GCCcore-11.2.0-Java-11 2.7.7-GCCcore-10.3.0-Java-11
statsmodels	Statsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.	TINKERCLIFFS 0.12.2-foss-2021a
ABINIT	ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.	TINKERCLIFFS 8.10.3-intel-2019b
jupyter-server	The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.	TINKERCLIFFS 1.21.0-GCCcore-11.3.0
imkl-FFTW	FFTW interfaces using Intel oneAPI Math Kernel Library	TINKERCLIFFS 2022.2.1-iimpi-2022b
mpi4py	MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.	TINKERCLIFFS 3.1.1-gompi-2020b-timed-pingpong 3.0.2-iimpi-2019b-timed-pingpong 3.0.2-gompi-2020a-timed-pingpong
flex	Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.	TINKERCLIFFS 2.6.4-GCCcore-11.2.0 2.6.4-GCCcore-10.2.0 2.6.4-GCCcore-12.2.0 2.6.4-GCCcore-11.3.0 2.6.4-GCCcore-10.3.0 2.6.4 2.6.4-GCCcore-8.3.0 2.6.4-GCCcore-8.2.0 2.6.4-GCCcore-9.3.0
libxml2	Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).	TINKERCLIFFS 2.9.13-GCCcore-11.3.0 2.9.10-GCCcore-9.3.0 2.9.8-GCCcore-8.2.0 2.9.10-GCCcore-10.2.0 2.9.10-GCCcore-11.2.0 2.10.3-GCCcore-12.2.0 2.9.9-GCCcore-8.3.0 2.9.10-GCCcore-8.3.0 2.9.10-intel-2019b 2.9.10-GCCcore-10.3.0
expat	Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).	TINKERCLIFFS 2.2.7-GCCcore-8.3.0 2.2.9-intel-2019b 2.4.1-intel-2021a 2.4.9-GCCcore-12.2.0 2.2.6-GCCcore-8.2.0 2.2.9-GCCcore-9.3.0 2.4.1-GCCcore-11.2.0 2.4.8-GCCcore-11.3.0 2.2.9-GCCcore-10.3.0 2.2.9-GCCcore-10.2.0
canu	Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing	TINKERCLIFFS 1.9-GCCcore-8.3.0-Java-11
gsutil	gsutil is a Python application that lets you access Cloud Storage from the command line.	TINKERCLIFFS 5.10-GCCcore-11.2.0
ANSYS	ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater.	TINKERCLIFFS 19.5 20.2 21.1 21.2 22.1 20.1
texinfo	Texinfo is the official documentation format of the GNU project.	TINKERCLIFFS 6.7-GCCcore-8.3.0
RapidJSON	A fast JSON parser/generator for C++ with both SAX/DOM style API	TINKERCLIFFS 1.1.0-GCCcore-10.3.0 1.1.0-GCCcore-11.2.0
cytosim	Cytosim is a cytoskeleton simulation engine written in C++ working on Mac OS, GNU/Linux and Windows (with Cygwin).	TINKERCLIFFS 20190117-gomkl-2019a-mkl
JupyterLab	JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.	TINKERCLIFFS 3.5.0-GCCcore-11.3.0
metis-5.1.0	METIS_DESCRIPTION	TINKERCLIFFS gcc-8.3.0 gcc-9.3.0 intel-2019b
NSPR	Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.	TINKERCLIFFS 4.21-GCCcore-8.3.0 4.25-GCCcore-9.3.0 4.30-GCCcore-10.3.0
Python	Python is a programming language that lets you work more quickly and integrate your systems more effectively.	TINKERCLIFFS 3.9.6-GCCcore-11.2.0-bare 3.9.5-GCCcore-10.3.0 2.7.18-GCCcore-10.3.0-bare 3.7.4-GCCcore-8.3.0 3.9.5-GCCcore-10.3.0-bare 3.8.2-GCCcore-9.3.0 3.9.6-GCCcore-11.2.0 3.10.4-GCCcore-11.3.0 2.7.18-GCCcore-9.3.0 3.7.2-GCCcore-8.2.0 2.7.18-GCCcore-10.2.0 2.7.16-GCCcore-8.3.0 3.8.6-GCCcore-10.2.0 2.7.15-GCCcore-8.2.0 3.10.8-GCCcore-12.2.0-bare 3.10.4-GCCcore-11.3.0-bare
make	GNU version of make utility	TINKERCLIFFS 4.2.1-GCCcore-8.3.0
glm-0.9.8.5	SOFTWAREDESCRIPTION	TINKERCLIFFS intel-2019b
NSS	Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.	TINKERCLIFFS 3.65-GCCcore-10.3.0 3.51-GCCcore-9.3.0 3.45-GCCcore-8.3.0
BUSCO	BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs	TINKERCLIFFS 5.0.0-foss-2020b
SAMtools	SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.	TINKERCLIFFS 1.11-GCC-10.2.0
yaff	Yaff stands for ‘Yet another force field’. It is a pythonic force-field code.	TINKERCLIFFS 1.6.0-foss-2020a-Python-3.8.2
bzip2	bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.	TINKERCLIFFS 1.0.8-GCCcore-10.3.0 1.0.8-GCCcore-8.3.0 1.0.8-GCCcore-11.3.0 1.0.8-GCCcore-12.2.0 1.0.8-GCCcore-10.2.0 1.0.8-GCCcore-11.2.0 1.0.8-GCCcore-9.3.0 1.0.6-GCCcore-8.2.0
trilinos-12.18.1	TRILINOSDESCRIPTION	TINKERCLIFFS gcc-8.3.0 gcc-9.3.0 intel-2019b
HPL	HPL is a software package that solves a (random) dense linear system in double precision (64 bits	TINKERCLIFFS 2.3-foss-2020a 2.3-intel-2019b
SoX	SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion.	TINKERCLIFFS 14.4.2-GCC-10.2.0
Autoconf	Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.	TINKERCLIFFS 2.69-GCCcore-8.2.0 2.69-GCCcore-8.3.0 2.71-GCCcore-10.3.0 2.69-GCCcore-10.2.0 2.71-GCCcore-11.3.0 2.71-GCCcore-12.2.0 2.71-GCCcore-11.2.0 2.69-GCCcore-9.3.0
iomkl	Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.	TINKERCLIFFS 2019b
OpenMM	OpenMM is a toolkit for molecular simulation.	TINKERCLIFFS 7.4.1-intel-2019b-Python-3.7.4
LAME	LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.	TINKERCLIFFS 3.100-GCCcore-10.3.0 3.100-GCCcore-8.3.0 3.100-GCCcore-11.2.0 3.100-GCCcore-10.2.0 3.100-GCCcore-9.3.0
Julia	Julia is a high-level, high-performance dynamic programming language for numerical computing	TINKERCLIFFS 1.5.1-linux-x86_64 1.8.5-linux-x86_64 1.4.2-linux-x86_64 1.7.2-linux-x86_64
at-spi2-atk	AT-SPI 2 toolkit bridge	TINKERCLIFFS 2.38.0-GCCcore-10.3.0 2.34.2-GCCcore-9.3.0 2.38.0-GCCcore-10.2.0
gzip	gzip (GNU zip) is a popular data compression program as a replacement for compress	TINKERCLIFFS 1.10-GCCcore-10.3.0 1.10-GCCcore-9.3.0 1.12-GCCcore-11.3.0 1.10-GCCcore-10.2.0 1.10-GCCcore-11.2.0
Meson	Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.	TINKERCLIFFS 0.51.2-GCCcore-8.3.0-Python-3.7.4 0.53.2-GCCcore-9.3.0-Python-3.8.2 0.53.2-intel-2019b-Python-3.7.4 0.58.2-GCCcore-11.2.0 0.55.1-GCCcore-9.3.0-Python-3.8.2 0.55.3-GCCcore-10.2.0 0.58.0-GCCcore-10.3.0 0.50.0-GCCcore-8.2.0-Python-3.7.2 0.62.1-GCCcore-11.3.0
ffnvcodec	FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).	TINKERCLIFFS 11.1.5.2
Schrodinger	Schrodinger aims to provide integrated software solutions and services that truly meet its customers needs. We want to empower researchers around the world to achieve their goals of improving human health and quality of life through advanced computational techniques that transform the way chemists design compounds and materials.	TINKERCLIFFS 2020-4
CGAL	The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.	TINKERCLIFFS 4.14.3-gompi-2021a 4.14.3-gompi-2020a-Python-3.8.2 4.14.1-foss-2019b-Python-3.7.4
cifs-utils	CIFSUTILSDESCRIPTION	TINKERCLIFFS 7.0
ELPA	Eigenvalue SoLvers for Petaflop-Applications .	TINKERCLIFFS 2019.11.001-intel-2019b
BLIS	BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.	TINKERCLIFFS 0.8.1-GCC-11.2.0 0.9.0-GCC-11.3.0 0.9.0-GCC-12.2.0
beagle-lib	beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.	TINKERCLIFFS 3.1.2-GCC-10.2.0
MPICH	MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3).	TINKERCLIFFS 3.3.2-GCC-8.3.0
ls-prepost	LS-PrePost	TINKERCLIFFS 4.8
libglvnd	libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.	TINKERCLIFFS 1.3.3-GCCcore-11.2.0 1.3.3-GCCcore-10.3.0 1.3.2-GCCcore-10.2.0 1.2.0-GCCcore-9.3.0 1.2.0-GCCcore-8.3.0
GSL	The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.	TINKERCLIFFS 2.6-iccifort-2019.5.281 2.6-GCC-10.2.0 2.7-intel-compilers-2021.4.0 2.6-GCC-9.3.0 2.7-GCC-10.3.0 2.7-intel-compilers-2021.2.0 2.7-GCC-11.2.0
SuiteSparse	SuiteSparse is a collection of libraries manipulate sparse matrices.	TINKERCLIFFS 5.6.0-foss-2019b-METIS-5.1.0 5.8.1-foss-2020b-METIS-5.1.0 5.6.0-intel-2019b-METIS-5.1.0
ABAQUS	Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.	TINKERCLIFFS 2018 2022
JsonCpp	JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.	TINKERCLIFFS 1.9.4-GCCcore-10.2.0
Boost.Python	Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.	TINKERCLIFFS 1.71.0-gompi-2019b
SCons	SCons is a software construction tool.	TINKERCLIFFS 4.0.1-GCCcore-10.2.0
libcerf	libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.	TINKERCLIFFS 1.17-GCCcore-10.3.0 1.13-GCCcore-8.3.0
snappy	Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.	TINKERCLIFFS 1.1.7-GCCcore-8.3.0 1.1.9-GCCcore-11.2.0 1.1.8-GCCcore-9.3.0 1.1.9-GCCcore-11.3.0 1.1.8-GCCcore-10.3.0 1.1.8-GCCcore-10.2.0
Ninja	Ninja is a small build system with a focus on speed.	TINKERCLIFFS 1.9.0-GCCcore-8.2.0 1.10.2-GCCcore-10.3.0 1.9.0-GCCcore-8.3.0 1.10.1-GCCcore-10.2.0 1.10.0-GCCcore-9.3.0 1.10.2-GCCcore-11.2.0 1.10.0-intel-2019b 1.10.2-GCCcore-11.3.0
iccifort	Intel C, C++ & Fortran compilers	TINKERCLIFFS 2019.5.281 2020.4.304
UnZip	UnZip is an extraction utility for archives compressed in .zip format (also called “zipfiles”). Although highly compatible both with PKWARE’s PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP’s own Zip program, our primary objectives have been portability and non-MSDOS functionality.	TINKERCLIFFS 6.0-GCCcore-12.2.0 6.0-GCCcore-11.2.0 6.0-GCCcore-10.2.0 6.0-GCCcore-10.3.0 6.0-GCCcore-11.3.0
BBMap	BBMap short read aligner, and other bioinformatic tools.	TINKERCLIFFS 38.98-GCC-11.2.0 38.96-GCC-10.3.0
libdrm	Direct Rendering Manager runtime library.	TINKERCLIFFS 2.4.97-GCCcore-8.2.0 2.4.106-GCCcore-10.3.0 2.4.107-GCCcore-11.2.0 2.4.100-GCCcore-9.3.0 2.4.102-GCCcore-10.2.0 2.4.99-GCCcore-8.3.0
intel-compilers	Intel C, C++ & Fortran compilers (classic and oneAPI)	TINKERCLIFFS 2022.2.1 2021.2.0 2021.4.0
dealii-9.3.1	DEALIIDESCRIPTION	TINKERCLIFFS gcc-9.3.0
iompi	Intel C/C++ and Fortran compilers, alongside Open MPI.	TINKERCLIFFS 2021a 2019b
FEniCS	FEniCS is a computing platform for solving partial differential equations (PDEs).	TINKERCLIFFS 2019.1.0-foss-2019b-Python-3.7.4
intel	Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).	TINKERCLIFFS 2022b 2021a 2020b 2019b
numactl	The numactl program allows you to run your application program on specific cpu’s and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.	TINKERCLIFFS 2.0.14-GCCcore-11.3.0 2.0.13-GCCcore-10.2.0 2.0.16-GCCcore-12.2.0 2.0.13-GCCcore-8.3.0 2.0.12-GCCcore-8.3.0 2.0.14-GCCcore-11.2.0 2.0.13-GCCcore-9.3.0 2.0.12-GCCcore-8.2.0 2.0.14-GCCcore-10.3.0
netCDF-C++4	NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.	TINKERCLIFFS 4.3.1-iimpi-2021a
scikit-learn	Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.	TINKERCLIFFS 0.24.2-foss-2021a
RepeatMasker	RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.	TINKERCLIFFS 4.1.4-foss-2022a
help2man	help2man produces simple manual pages from the ‘–help’ and ‘–version’ output of other commands.	TINKERCLIFFS 1.49.2-GCCcore-12.2.0 1.47.8-GCCcore-8.3.0 1.49.2-GCCcore-11.3.0 1.47.12-GCCcore-9.3.0 1.47.7-GCCcore-8.2.0 1.47.4 1.48.3-GCCcore-10.3.0 1.47.16-GCCcore-10.2.0 1.48.3-GCCcore-11.2.0
Inspector	Intel Inspector is a dynamic memory and threading error checking tool for users developing serial and parallel applications	TINKERCLIFFS 2021.4.0
pkg-config	pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c pkg-config --libs --cflags glib-2.0 for instance, rather than hard-coding values on where to find glib (or other libraries).	TINKERCLIFFS 0.29.2-GCCcore-8.2.0 0.29.2-GCCcore-9.3.0 0.29.2-GCCcore-8.3.0 0.29.2-GCCcore-11.2.0 0.29.2-GCCcore-10.2.0 0.29.2-GCCcore-10.3.0
gflags	The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for standard types such as string and the ability to define flags in the source file in which they are used.	TINKERCLIFFS 2.2.2-GCCcore-9.3.0
Java	Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.	TINKERCLIFFS 1.8.0_292-OpenJDK 11.0.2
gperftools	gperftools is a collection of a high-performance multi-threaded malloc(	TINKERCLIFFS 2.8-GCCcore-10.2.0
Voro++	Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.	TINKERCLIFFS 0.4.6-GCCcore-11.2.0 0.4.6-GCCcore-9.3.0
GDAL	GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.	TINKERCLIFFS 3.3.0-foss-2021a 3.0.2-intel-2019b-Python-3.7.4 3.0.4-foss-2020a-Python-3.8.2
intltool	intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.	TINKERCLIFFS 0.51.0-GCCcore-10.3.0 0.51.0-GCCcore-10.2.0 0.51.0-GCCcore-11.2.0 0.51.0-GCCcore-8.3.0 0.51.0-GCCcore-9.3.0 0.51.0-GCCcore-8.2.0
glibc	The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems, as well as many other systems that use Linux as the kernel.	TINKERCLIFFS 2.30-GCCcore-8.3.0
slepc4py	Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations.	TINKERCLIFFS 3.12.0-foss-2019b-Python-3.7.4
Ruby	Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.	TINKERCLIFFS 2.7.2-GCCcore-9.3.0
Doxygen	Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.	TINKERCLIFFS 1.8.16-GCCcore-8.3.0 1.9.1-GCCcore-10.3.0 1.8.17-GCCcore-9.3.0 1.9.1-GCCcore-11.2.0 1.8.20-GCCcore-10.2.0
TRF	Tandem Repeats Finder: a program to analyze DNA sequences.	TINKERCLIFFS 4.09.1-GCCcore-11.3.0
cURL	libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.	TINKERCLIFFS 7.86.0-GCCcore-12.2.0 7.78.0-GCCcore-11.2.0 7.76.0-GCCcore-10.3.0 7.66.0-GCCcore-8.3.0 7.69.1-GCCcore-9.3.0 7.83.0-GCCcore-11.3.0 7.72.0-GCCcore-10.2.0 7.63.0-GCCcore-8.2.0
MPC	Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.	TINKERCLIFFS 1.1.0-GCC-8.3.0 1.2.1-GCCcore-10.3.0
LAMMPS	LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.	TINKERCLIFFS 23Jun2022-foss-2021b-kokkos 3Mar2020-foss-2020a-Python-3.8.2-kokkos
libjpeg-turbo	libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.	TINKERCLIFFS 2.0.4-intel-2019b 2.1.3-GCCcore-11.3.0 2.0.6-GCCcore-10.3.0 2.0.6-GCCcore-11.2.0 2.0.5-GCCcore-10.2.0 2.0.3-GCCcore-8.3.0 2.0.4-GCCcore-9.3.0
libtool	GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.	TINKERCLIFFS 2.4.6-GCCcore-8.3.0 2.4.6-GCCcore-8.2.0 2.4.6-GCCcore-9.3.0 2.4.6-GCCcore-11.2.0 2.4.6-GCCcore-10.2.0 2.4.7-GCCcore-12.2.0 2.4.7-GCCcore-11.3.0 2.4.6-GCCcore-10.3.0
SLEPc	SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.	TINKERCLIFFS 3.12.2-intel-2019b 3.12.2-foss-2019b-Python-3.7.4
Mako	A super-fast templating language that borrows the best ideas from the existing templating languages	TINKERCLIFFS 1.0.8-GCCcore-8.2.0 1.1.0-GCCcore-8.3.0 1.1.3-GCCcore-10.2.0 1.1.4-GCCcore-11.2.0 1.1.4-GCCcore-10.3.0 1.1.2-GCCcore-9.3.0
minimap2	Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.	TINKERCLIFFS 2.17-GCCcore-9.3.0
gmsh	Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.	TINKERCLIFFS 4.5.6-intel-2019b-Python-2.7.16
git	Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.	TINKERCLIFFS 2.33.1-GCCcore-11.2.0-nodocs 2.36.0-GCCcore-11.3.0-nodocs 2.28.0-GCCcore-10.2.0-nodocs
gcloud	Libraries and tools for interacting with Google Cloud products and services.	TINKERCLIFFS 382.0.0
xorg-macros	X.org macros utilities.	TINKERCLIFFS 1.19.3-GCCcore-10.3.0 1.19.3-GCCcore-12.2.0 1.19.3-GCCcore-11.2.0 1.19.2-GCCcore-10.2.0 1.19.2-GCCcore-8.2.0 1.19.2-GCCcore-9.3.0 1.19.3-GCCcore-11.3.0 1.19.2-GCCcore-8.3.0
kim-api	Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.	TINKERCLIFFS 2.1.3-foss-2020a 2.3.0-GCCcore-11.2.0
lstc-licensetools	LSTC LICENSE TOOLS for checking license status and managing user-checked out licenses.	TINKERCLIFFS 77918
groff	Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.	TINKERCLIFFS 1.22.4-GCCcore-10.3.0 1.22.4-GCCcore-11.3.0 1.22.4-GCCcore-11.2.0 1.22.4-GCCcore-12.2.0
HMMER2	HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments.	TINKERCLIFFS 2.3.2-GCC-8.3.0
GROMACS	GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.	TINKERCLIFFS 2020.1-foss-2020a-Python-3.8.2 2020.3-foss-2020a-Python-3.8.2
NanoPlot	Plotting suite for long read sequencing data and alignments	TINKERCLIFFS 1.33.0-foss-2021a
LTR_retriever	LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.	TINKERCLIFFS 2.9.0-foss-2022a
GMP	GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.	TINKERCLIFFS 6.2.0-GCCcore-10.2.0 6.2.0-GCCcore-9.3.0 6.2.1-GCCcore-11.2.0 6.2.1-GCCcore-10.3.0 6.1.2-GCCcore-8.2.0 6.2.0-intel-2019b 6.1.2-GCCcore-8.3.0 6.2.1-GCCcore-11.3.0
Pango	Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.	TINKERCLIFFS 1.44.7-GCCcore-9.3.0 1.44.7-GCCcore-8.3.0 1.47.0-GCCcore-10.2.0 1.48.5-GCCcore-10.3.0
GMT	GMT is an open source collection of about 80 command-line tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another 40 more specialized and discipline-specific tools.	TINKERCLIFFS 5.4.5-foss-2020a
Lua	Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.	TINKERCLIFFS 5.1.5-GCCcore-8.3.0 5.4.3-GCCcore-10.3.0
GDB	The GNU Project Debugger	TINKERCLIFFS 10.2-GCCcore-10.3.0
SU2	SU2 is an open-source collection of software tools written in C++ and Python for the analysis of partial differential equations (PDEs) and PDE-constrained optimization problems on unstructured meshes with state-of-the-art numerical methods.	TINKERCLIFFS 8.0.0-foss-2022a-mpi
DendroPy	A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.	TINKERCLIFFS 4.5.2-GCCcore-10.2.0
impi	Intel MPI Library, compatible with MPICH ABI	TINKERCLIFFS 2021.2.0-intel-compilers-2021.2.0 2021.4.0-intel-compilers-2021.4.0 2021.7.1-intel-compilers-2022.2.1 2019.9.304-iccifort-2020.4.304 2018.5.288-iccifort-2019.5.281
GLib	GLib is one of the base libraries of the GTK+ project	TINKERCLIFFS 2.66.1-GCCcore-10.2.0 2.68.2-GCCcore-10.3.0 2.62.0-GCCcore-8.3.0 2.64.1-GCCcore-9.3.0
nanopolish	Software package for signal-level analysis of Oxford Nanopore sequencing data.	TINKERCLIFFS 0.13.2-foss-2020a-Python-3.8.2
Seaborn	Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.	TINKERCLIFFS 0.11.2-foss-2021a
ESMF	The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.	TINKERCLIFFS 8.2.0-intel-2021a
Mathematica	Mathematica is a computational software program used in many scientific, engineering, mathematical and computing fields.	TINKERCLIFFS 13.2.0 12.0.0
ea-utils	Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs.	TINKERCLIFFS 1.04.807-intel-2019b
Patran	PATRANDESCRIPTION	TINKERCLIFFS 2021
Tk	Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.	TINKERCLIFFS 8.6.11-GCCcore-10.3.0 8.6.11-GCCcore-11.2.0 8.6.10-GCCcore-9.3.0 8.6.10-intel-2019b 8.6.10-GCCcore-10.2.0 8.6.9-GCCcore-8.3.0
file	The file command is ‘a file type guesser’, that is, a command-line tool that tells you in words what kind of data a file contains.	TINKERCLIFFS 5.38-GCCcore-9.3.0
jbigkit	JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.	TINKERCLIFFS 2.1-GCCcore-11.2.0
SQLite	SQLite: SQL Database Engine in a C Library	TINKERCLIFFS 3.36-GCCcore-11.2.0 3.38.3-GCCcore-11.3.0 3.29.0-GCCcore-8.3.0 3.39.4-GCCcore-12.2.0 3.27.2-GCCcore-8.2.0 3.33.0-GCCcore-10.2.0 3.35.4-GCCcore-10.3.0 3.31.1-intel-2019b 3.31.1-GCCcore-9.3.0
gnuplot	Portable interactive, function plotting utility	TINKERCLIFFS 5.2.8-GCCcore-8.3.0 5.4.2-GCCcore-10.3.0
gettext	GNU ‘gettext’ is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation	TINKERCLIFFS 0.21 0.21-GCCcore-10.3.0 0.21-GCCcore-11.2.0 0.19.8.1 0.21-GCCcore-11.3.0 0.20.1-GCCcore-9.3.0 0.20.1-GCCcore-8.3.0 0.21.1 0.20.1 0.21-GCCcore-10.2.0 0.19.8.1-GCCcore-8.2.0
Xvfb	Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.	TINKERCLIFFS 1.20.9-GCCcore-10.2.0 1.20.11-GCCcore-10.3.0
pybind11	pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.	TINKERCLIFFS 2.7.1-GCCcore-11.2.0 2.9.2-GCCcore-11.3.0 2.6.2-GCCcore-10.3.0 2.4.3-GCCcore-9.3.0-Python-3.8.2 2.6.0-GCCcore-10.2.0 2.4.3-GCCcore-8.3.0-Python-3.7.4
GObject-Introspection	GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.	TINKERCLIFFS 1.66.1-GCCcore-10.2.0 1.63.1-GCCcore-8.3.0-Python-3.7.4 1.68.0-GCCcore-10.3.0 1.64.0-GCCcore-9.3.0-Python-3.8.2
aspect-2.3.0	AspectDESCRIPTION	TINKERCLIFFS gcc-9.3.0 intel-2019b
HarfBuzz	HarfBuzz is an OpenType text shaping engine.	TINKERCLIFFS 2.6.4-GCCcore-8.3.0 2.6.4-GCCcore-9.3.0 2.6.7-GCCcore-10.2.0 2.8.1-GCCcore-10.3.0
Delft3d	DELFT3DDESCRIPTION	TINKERCLIFFS 2023.02-intel-2022b
Serf	The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library	TINKERCLIFFS 1.3.9-GCCcore-10.2.0
libxc	Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.	TINKERCLIFFS 4.3.4-GCC-9.3.0 3.0.1-intel-2019b 4.2.3-intel-2019b 4.3.4-iccifort-2019.5.281
libogg	Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.	TINKERCLIFFS 1.3.4-GCCcore-10.2.0 1.3.4-GCCcore-10.3.0
libffi	The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.	TINKERCLIFFS 3.4.2-GCCcore-11.2.0 3.4.4-GCCcore-12.2.0 3.3-GCCcore-9.3.0 3.4.2-GCCcore-11.3.0 3.3-intel-2019b 3.2.1-GCCcore-8.3.0 3.3-GCCcore-10.2.0 3.3-GCCcore-10.3.0 3.2.1-GCCcore-8.2.0
ioapi	The Models-3/EDSS Input/Output Applications Programming Interface (I/O API) provides the environmental model developer with an easy-to-learn, easy-to-use programming library for data storage and access, available from both Fortran and C. The same routines can be used for both file storage (using netCDF files) and model coupling (using PVM mailboxes). It is the standard data access library for both the NCSC/CMAS’s EDSS project and EPA’s Models-3, CMAQ, and SMOKE, as well as various other atmospheric and hydrological modeling systems.	TINKERCLIFFS 3.2-20200828-iimpi-2021a-nocpl
ICU	ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.	TINKERCLIFFS 66.1-GCCcore-9.3.0 64.2-GCCcore-8.3.0 66.1-intel-2019b 67.1-GCCcore-10.2.0 71.1-GCCcore-11.3.0 69.1-GCCcore-11.2.0 69.1-GCCcore-10.3.0
PostgreSQL	PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.	TINKERCLIFFS 14.4-GCCcore-11.3.0
MATLAB	MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.	TINKERCLIFFS 2019b
libmatheval	GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.	TINKERCLIFFS 1.1.11-GCCcore-9.3.0
nsync	nsync is a C library that exports various synchronization primitives, such as mutexes	TINKERCLIFFS 1.24.0-GCCcore-10.2.0
PETSc	PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.	TINKERCLIFFS 3.12.4-foss-2019b-Python-3.7.4 3.12.4-intel-2019b
OpenMPI	The Open MPI Project is an open source MPI-3 implementation.	TINKERCLIFFS 4.1.4-GCC-12.2.0 4.1.4-GCC-11.3.0 4.1.1-GCC-10.3.0 3.1.3-GCC-8.2.0-2.31.1 4.0.5-GCC-10.2.0 3.1.4-iccifort-2019.5.281 4.0.3-GCC-9.3.0 4.0.3-iccifort-2019.5.281 4.1.1-GCC-11.2.0 4.1.1-intel-compilers-2021.2.0 3.1.4-GCC-8.3.0
netCDF	NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.	TINKERCLIFFS 4.6.1-intel-2019b 4.7.1-gompi-2019b 4.8.1-gompi-2021b 4.8.0-iompi-2021a 4.7.1-iimpi-2019b 4.8.0-gompi-2021a 4.8.1-iimpi-2021a 4.7.4-gompi-2020a 4.7.4-gompi-2020b
time	The `time’ command runs another program, then displays information about the resources used by that program, collected by the system while the program was running.	TINKERCLIFFS 1.9-GCCcore-10.2.0 1.9-GCCcore-8.3.0